SRX188653
GSM1003826: UW DnaseDgf TReg adult-8wks

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Blood
Cell type
CD4+ T cells
NA
NA

Attributes by original data submitter

Sample

source_name
TReg
biomaterial_provider
Stam lab
lab
UW-m
lab description
Stamatoyannopoulous - University of Washington
datatype
DnaseDgf
datatype description
DNase Digital Footprinting
cell
TReg
cell organism
mouse
cell description
Regulatory T cells CD4+,CD25+
cell sex
M
age
adult-8wks
age description
Adult 8 weeks
age
adult-8wks
age description
Adult 8 weeks
labexpid
DS17864
labversion
Hotspot-v5.2
replicate
1
strain
C57BL/6
strain description
C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name
GSM1003826: UW_DnaseDgf_TReg_adult-8wks
library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
636852981
Reads aligned (%)
82.5
Duplicates removed (%)
55.6
Number of peaks
101102 (qval < 1E-05)

mm9

Number of total reads
636852981
Reads aligned (%)
82.3
Duplicates removed (%)
55.6
Number of peaks
102467 (qval < 1E-05)

Base call quality data from DBCLS SRA