Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Kidney

Cell type

Kidney

MeSH Description

Body organ that filters blood for the secretion of URINE and that regulates ion concentrations.

Sample

source_name

Kidney

biomaterial_provider

1)Stam lab ; 2)CSHL lab

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

Kidney

cell organism

mouse

cell description

Kidney

cell sex

M

age

adult-8wks

age description

Adult 8 weeks

age

adult-8wks

age description

Adult 8 weeks

labexpid

DS13948

labversion

Hotspot-v5.2

replicate

1

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM1003819: UW_DnaseDgf_Kidney_adult-8wks

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

194674012

Reads aligned (%)

93.2

Duplicates removed (%)

34.0

Number of peaks

142502 (qval < 1E-05)

mm9

Number of total reads

194674012

Reads aligned (%)

93.1

Duplicates removed (%)

34.0

Number of peaks

142473 (qval < 1E-05)