Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Lung

Cell type

Lung

MeSH Description

Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Sample

source_name

Lung

biomaterial_provider

1)LICR lab; 2)CSHL lab

lab

UW-m

lab description

Stamatoyannopoulous - University of Washington

datatype

DnaseDgf

datatype description

DNase Digital Footprinting

cell

Lung

cell organism

mouse

cell description

Lung

cell sex

M

age

adult-8wks

age description

Adult 8 weeks

age

adult-8wks

age description

Adult 8 weeks

labexpid

DS14479

labversion

Hotspot-v5.2

replicate

1

strain

C57BL/6

strain description

C57 black 6, the most common inbred strain of laboratory mouse

Sequenced DNA Library

library_name

GSM1003817: UW_DnaseDgf_Lung_adult-8wks

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

Sequencing Platform

instrument_model

Illumina HiSeq 2000

mm10

Number of total reads

533718751

Reads aligned (%)

88.4

Duplicates removed (%)

43.1

Number of peaks

183044 (qval < 1E-05)

mm9

Number of total reads

533718751

Reads aligned (%)

88.3

Duplicates removed (%)

43.1

Number of peaks

183159 (qval < 1E-05)