Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pancreas
Cell type
Islets of Langerhans
MeSH Description
Irregular microscopic structures consisting of cords of endocrine cells that are scattered throughout the PANCREAS among the exocrine acini. Each islet is surrounded by connective tissue fibers and penetrated by a network of capillaries. There are four major cell types. The most abundant beta cells (50-80%) secrete INSULIN. Alpha cells (5-20%) secrete GLUCAGON. PP cells (10-35%) secrete PANCREATIC POLYPEPTIDE. Delta cells (~5%) secrete SOMATOSTATIN.

Attributes by original data submitter

Sample

source_name
islet
tissue
pancreatic islet
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
200918067
Reads aligned (%)
98.0
Duplicates removed (%)
16.2
Number of peaks
5244 (qval < 1E-05)

mm9

Number of total reads
200918067
Reads aligned (%)
97.8
Duplicates removed (%)
16.1
Number of peaks
5897 (qval < 1E-05)

Base call quality data from DBCLS SRA