SRX188594
GSM1006152: Input KARPAS-422; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
KARPAS-422
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Non-Hodgkins

Attributes by original data submitter

Sample

source_name
KARPAS-422
cell line
KARPAS-422
genotype/variation
EZH2 mutant
average gic50
232 nM
chip antibody
Input control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
40643223
Reads aligned (%)
99.1
Duplicates removed (%)
36.7
Number of peaks
1103 (qval < 1E-05)

hg19

Number of total reads
40643223
Reads aligned (%)
98.3
Duplicates removed (%)
38.2
Number of peaks
1260 (qval < 1E-05)

Base call quality data from DBCLS SRA