Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
KARPAS-422
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Non-Hodgkins

Attributes by original data submitter

Sample

source_name
KARPAS-422
cell line
KARPAS-422
genotype/variation
EZH2 mutant
average gic50
232 nM
chip antibody
anti-H3K27me3
chip antibody vendor
Millipore

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

hg38

Number of total reads
40539906
Reads aligned (%)
99.2
Duplicates removed (%)
3.3
Number of peaks
1672 (qval < 1E-05)

hg19

Number of total reads
40539906
Reads aligned (%)
98.8
Duplicates removed (%)
4.2
Number of peaks
1697 (qval < 1E-05)

Base call quality data from DBCLS SRA