SRX188592
GSM1006150: Input Pfeiffer; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
Pfeiffer
Primary Tissue
Blood
Tissue Diagnosis
Hodgkin's Lymphoma

Attributes by original data submitter

Sample

source_name
Pfeiffer
cell line
Pfeiffer
genotype/variation
EZH2 mutant
average gic50
28 nM
chip antibody
Input control

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41201766
Reads aligned (%)
99.3
Duplicates removed (%)
17.8
Number of peaks
1187 (qval < 1E-05)

hg19

Number of total reads
41201766
Reads aligned (%)
98.5
Duplicates removed (%)
18.9
Number of peaks
1250 (qval < 1E-05)

Base call quality data from DBCLS SRA