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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K27me3
wikigenes
PDBj
CellType: Pfeiffer
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX188591
GSM1006149: H3K27me3 Pfeiffer; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K27me3
Cell type
Cell type Class
Blood
Cell type
Pfeiffer
Primary Tissue
Blood
Tissue Diagnosis
Hodgkin's Lymphoma
Attributes by original data submitter
Sample
source_name
Pfeiffer
cell line
Pfeiffer
genotype/variation
EZH2 mutant
average gic50
28 nM
chip antibody
anti-H3K27me3
chip antibody vendor
Millipore
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
39082842
Reads aligned (%)
99.2
Duplicates removed (%)
3.6
Number of peaks
1773 (qval < 1E-05)
hg19
Number of total reads
39082842
Reads aligned (%)
98.8
Duplicates removed (%)
4.1
Number of peaks
1814 (qval < 1E-05)
Base call quality data from
DBCLS SRA