Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MED1

Cell type

Cell type Class
Muscle
Cell type
Rh-4
NA
NA

Attributes by original data submitter

Sample

source_name
RMS cell line, PAX3-FOXO1
cell line
RH4
cell type
rhabdomyosarcoma
antibody
MED1 (Bethyl, cat. #A300-793A)
enrichment target
MED1
target function
Chromatin transcriptional coactivator

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. DNase DNA purification was performed by column (MiniElute PCR purification kit, Qiagen). Standard Illumina barcodes were introduced during library preparation

Sequencing Platform

instrument_model
NextSeq 500

hg19

Number of total reads
14880574
Reads aligned (%)
86.8
Duplicates removed (%)
9.9
Number of peaks
722 (qval < 1E-05)

hg38

Number of total reads
14880574
Reads aligned (%)
88.3
Duplicates removed (%)
8.8
Number of peaks
748 (qval < 1E-05)

Base call quality data from DBCLS SRA