Curated Sample Data


Genome
hg19
Antigen Class
TFs and others
Antigen
CTCF
Cell type Class
Muscle
Cell type
Rh-4

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
RMS cell line, PAX3-FOXO1
cell line
RH4
cell type
rhabdomyosarcoma
antibody
CTCF, EMD Millipore (cat07-729 lot2628833 pAb)
enrichment target
CTCF
target function
Domain Insulator

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
DNA was extracted from ChIP-seq samples prepared following the Active Motif ChIP-IT High Sensitivity kit protocol. DNase DNA purification was performed by column (MiniElute PCR purification kit, Qiagen). Standard Illumina barcodes were introduced during library preparation

Platform Information


instrument_model
NextSeq 500

External Database Query

Logs in read processing pipeline


Number of total reads
25334438
Reads aligned (%)
98.2
Duplicates removed (%)
23.1
Number of peaks
48569 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA