SRX187512
GSM1005193: AABB Input ChIP-seq; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
Mammary cells
NA
NA

Attributes by original data submitter

Sample

source_name
Mammary tissues
chip antibody
None
strain
129SV::FVB/N::C57BL/6
developmental stage
Day of parturition

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
67601869
Reads aligned (%)
98.2
Duplicates removed (%)
39.4
Number of peaks
567 (qval < 1E-05)

mm9

Number of total reads
67601869
Reads aligned (%)
98.0
Duplicates removed (%)
39.3
Number of peaks
626 (qval < 1E-05)

Base call quality data from DBCLS SRA