Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rorc

Cell type

Cell type Class
Blood
Cell type
Th17 Cells
MeSH Description
A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Attributes by original data submitter

Sample

source_name
Th17 in vitro
genotype
RORg ko
control
SL1236
factor
RORg
application
ChIP-Seq
cell type
Th17

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
35669968
Reads aligned (%)
86.1
Duplicates removed (%)
16.7
Number of peaks
806 (qval < 1E-05)

mm9

Number of total reads
35669968
Reads aligned (%)
85.8
Duplicates removed (%)
16.8
Number of peaks
900 (qval < 1E-05)

Base call quality data from DBCLS SRA