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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Rorc
wikigenes
PDBj
CellType: Th0
ATCC
MeSH
RIKEN BRC
SRX187258
GSM1004853: SL3779; Mus musculus; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
Rorc
Cell type
Cell type Class
Blood
Cell type
Th0
NA
NA
Attributes by original data submitter
Sample
source_name
Th0 in vitro
genotype
wt
control
SL3778
factor
RORg
application
ChIP-Seq
cell type
Th0
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer IIx
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
28337655
Reads aligned (%)
85.0
Duplicates removed (%)
18.2
Number of peaks
1089 (qval < 1E-05)
mm9
Number of total reads
28337655
Reads aligned (%)
84.8
Duplicates removed (%)
18.3
Number of peaks
1167 (qval < 1E-05)
Base call quality data from
DBCLS SRA