Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Rorc

Cell type

Cell type Class
Blood
Cell type
Th0
NA
NA

Attributes by original data submitter

Sample

source_name
Th0 in vitro
genotype
wt
control
SL3778
factor
RORg
application
ChIP-Seq
cell type
Th0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
28337655
Reads aligned (%)
85.0
Duplicates removed (%)
18.2
Number of peaks
1089 (qval < 1E-05)

mm9

Number of total reads
28337655
Reads aligned (%)
84.8
Duplicates removed (%)
18.3
Number of peaks
1167 (qval < 1E-05)

Base call quality data from DBCLS SRA