SRX187231
GSM1004826: SL6633; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf4

Cell type

Cell type Class
Blood
Cell type
Th0
NA
NA

Attributes by original data submitter

Sample

source_name
Th0 in vitro
genotype
Batf ko
control
SL6635
factor
IRF4
application
ChIP-Seq
cell type
Th0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
50265630
Reads aligned (%)
84.5
Duplicates removed (%)
18.6
Number of peaks
7659 (qval < 1E-05)

mm9

Number of total reads
50265630
Reads aligned (%)
84.3
Duplicates removed (%)
18.6
Number of peaks
7569 (qval < 1E-05)

Base call quality data from DBCLS SRA