Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ph-d

Cell type

Cell type Class
Embryo
Cell type
16-18h embryos
NA
NA

Attributes by original data submitter

Sample

source_name
Embryo 16h-18h
genotype
WT
tissue
Embryo
age
16-18
antibody
PH

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin prepared from Drosophila embryos was immunoprecipitated with specific antibodies and precipitated DNA was isolated (see mat and methods for details) Libraries were prepared according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

dm3

Number of total reads
47880602
Reads aligned (%)
12.1
Duplicates removed (%)
78.5
Number of peaks
3329 (qval < 1E-05)

dm6

Number of total reads
47880602
Reads aligned (%)
10.9
Duplicates removed (%)
80.3
Number of peaks
3123 (qval < 1E-05)

Base call quality data from DBCLS SRA