SRX187229
GSM1004824: SL1235; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf4

Cell type

Cell type Class
Blood
Cell type
Th0
NA
NA

Attributes by original data submitter

Sample

source_name
Th0 in vitro
genotype
wt
control
SL1234
factor
IRF4
application
ChIP-Seq
cell type
Th0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
14282264
Reads aligned (%)
90.7
Duplicates removed (%)
10.1
Number of peaks
5582 (qval < 1E-05)

mm9

Number of total reads
14282264
Reads aligned (%)
90.5
Duplicates removed (%)
10.3
Number of peaks
5695 (qval < 1E-05)

Base call quality data from DBCLS SRA