SRX187227
GSM1004822: SL9853; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Irf4

Cell type

Cell type Class
Blood
Cell type
Th0
NA
NA

Attributes by original data submitter

Sample

source_name
Th0 in vitro
genotype
Batf -/-
control
SL9857
factor
IRF4
time_point
48h
application
ChIP-Seq
cell type
Th0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
38428964
Reads aligned (%)
90.5
Duplicates removed (%)
17.0
Number of peaks
2284 (qval < 1E-05)

mm9

Number of total reads
38428964
Reads aligned (%)
90.3
Duplicates removed (%)
17.0
Number of peaks
2270 (qval < 1E-05)

Base call quality data from DBCLS SRA