SRX187208
GSM1004803: SL3781; Mus musculus; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ctcf

Cell type

Cell type Class
Blood
Cell type
Th0
NA
NA

Attributes by original data submitter

Sample

source_name
Th0 in vitro
genotype
wt
control
SL3778
factor
CTCF
application
ChIP-Seq
cell type
Th0

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22093014
Reads aligned (%)
89.5
Duplicates removed (%)
21.0
Number of peaks
35837 (qval < 1E-05)

mm9

Number of total reads
22093014
Reads aligned (%)
89.2
Duplicates removed (%)
21.1
Number of peaks
35813 (qval < 1E-05)

Base call quality data from DBCLS SRA