Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Batf

Cell type

Cell type Class
Blood
Cell type
Th17 Cells
MeSH Description
A subset of helper-effector T-lymphocytes which synthesize and secrete INTERLEUKINS IL-17; IL-17F; and IL-22. These cytokines are involved in host defenses and tissue inflammation in autoimmune diseases.

Attributes by original data submitter

Sample

source_name
Th17 in vitro
genotype
wt
control
SL10564
factor
BATF
time_point
16h
application
ChIP-Seq
cell type
Th17

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

mm10

Number of total reads
49426296
Reads aligned (%)
87.4
Duplicates removed (%)
28.4
Number of peaks
22035 (qval < 1E-05)

mm9

Number of total reads
49426296
Reads aligned (%)
87.2
Duplicates removed (%)
28.4
Number of peaks
22080 (qval < 1E-05)

Base call quality data from DBCLS SRA