SRX186833
GSM1003743: input mix; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
Breast cancer
NA
NA

Attributes by original data submitter

Sample

source_name
breast carcinoma
tissue
primary breast tumor
procedure
whole cell lysate

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33752777
Reads aligned (%)
90.9
Duplicates removed (%)
6.3
Number of peaks
1498 (qval < 1E-05)

hg19

Number of total reads
33752777
Reads aligned (%)
89.5
Duplicates removed (%)
8.6
Number of peaks
1475 (qval < 1E-05)

Base call quality data from DBCLS SRA