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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ESR1
wikigenes
PDBj
CellType: Breast cancer
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX186827
GSM1003737: poor outcome 6 ER; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
ESR1
Cell type
Cell type Class
Breast
Cell type
Breast cancer
NA
NA
Attributes by original data submitter
Sample
source_name
breast carcinoma
tissue
primary breast tumor
procedure
ChIP-seq
chip antibody
SC-543 (Santa Cruz)
aromatase inhibitor treatment outcome
poor
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
25288873
Reads aligned (%)
87.1
Duplicates removed (%)
2.4
Number of peaks
1174 (qval < 1E-05)
hg19
Number of total reads
25288873
Reads aligned (%)
86.2
Duplicates removed (%)
4.0
Number of peaks
1258 (qval < 1E-05)
Base call quality data from
DBCLS SRA