SRX186822
GSM1003732: poor outcome 4 H3K4me3; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
Breast cancer
NA
NA

Attributes by original data submitter

Sample

source_name
breast carcinoma
tissue
primary breast tumor
procedure
ChIP-seq
chip antibody
ab8580 (Abcam)
aromatase inhibitor treatment outcome
poor

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
20741336
Reads aligned (%)
96.9
Duplicates removed (%)
11.5
Number of peaks
12347 (qval < 1E-05)

hg19

Number of total reads
20741336
Reads aligned (%)
93.8
Duplicates removed (%)
17.7
Number of peaks
12051 (qval < 1E-05)

Base call quality data from DBCLS SRA