SRX186807
GSM1003717: good outcome 4 ER; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer
NA
NA

Attributes by original data submitter

Sample

source_name
breast carcinoma
tissue
primary breast tumor
procedure
ChIP-seq
chip antibody
SC-543 (Santa Cruz)
aromatase inhibitor treatment outcome
good

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22555195
Reads aligned (%)
96.0
Duplicates removed (%)
2.4
Number of peaks
2618 (qval < 1E-05)

hg19

Number of total reads
22555195
Reads aligned (%)
95.0
Duplicates removed (%)
3.8
Number of peaks
2290 (qval < 1E-05)

Base call quality data from DBCLS SRA