Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
Breast cancer
NA
NA

Attributes by original data submitter

Sample

source_name
breast carcinoma
tissue
primary breast tumor
procedure
ChIP-seq
chip antibody
SC-543 (Santa Cruz)
aromatase inhibitor treatment outcome
good

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg19

Number of total reads
28745770
Reads aligned (%)
84.4
Duplicates removed (%)
4.2
Number of peaks
1497 (qval < 1E-05)

hg38

Number of total reads
28745770
Reads aligned (%)
86.8
Duplicates removed (%)
2.5
Number of peaks
1559 (qval < 1E-05)

Base call quality data from DBCLS SRA