Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Breast
Cell type
Breast cancer
NA
NA

Attributes by original data submitter

Sample

source_name
breast carcinoma
tissue
primary breast tumor
procedure
ChIP-seq
chip antibody
ab8580 (Abcam)
aromatase inhibitor treatment outcome
good

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

hg38

Number of total reads
28108457
Reads aligned (%)
85.4
Duplicates removed (%)
5.4
Number of peaks
20166 (qval < 1E-05)

hg19

Number of total reads
28108457
Reads aligned (%)
84.8
Duplicates removed (%)
6.4
Number of peaks
20109 (qval < 1E-05)

Base call quality data from DBCLS SRA