SRX186797
GSM1003758: Stanford ChipSeq MEL Input DMSO 2.0pct std

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
MEL
Tissue
Blood
Lineage
cellLine
Description
Leukemia (K562 analog)

Attributes by original data submitter

Sample

source_name
MEL
biomaterial_provider
Weissman lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
MEL
cell organism
mouse
cell description
Leukemia (K562 analog)
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
DMSO_2.0pct
treatment description
5 d with 2% Dimethyl sufloxide (DMSO) (Weissman)
control
std
control description
Standard input signal for most experiments.
age
immortalized
age description
Immortal cells
control
std
control description
Standard input signal for most experiments.
controlid
MEL/DMSO_2.0pct/Input/std
replicate
1
strain
Unknown
strain description
Unknown strain origin

Sequenced DNA Library

library_name
GSM1003758: Stanford_ChipSeq_MEL_Input_DMSO_2.0pct_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
46191424
Reads aligned (%)
95.6
Duplicates removed (%)
16.0
Number of peaks
6168 (qval < 1E-05)

mm9

Number of total reads
46191424
Reads aligned (%)
95.4
Duplicates removed (%)
16.1
Number of peaks
6155 (qval < 1E-05)

Base call quality data from DBCLS SRA