Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
ES-E14
biomaterial_provider
Santos lab
lab
Stanford-m
lab description
Snyder - Stanford University
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell
ES-E14
cell organism
mouse
cell description
mouse embryonic stem cell line E14
cell sex
M
antibody
Input
antibody description
Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
age
E0
age description
Embryonic day 0 (stem cell)
control
std
control description
Standard input signal for most experiments.
controlid
ES-E14/None/Input/std
replicate
1
strain
129/Ola
strain description
The mice have yellow coats and late onset severe vacuolation in brain (700+ days). Inbred strain used as a control group to compare with null PrP mice.

Sequenced DNA Library

library_name
GSM1003746: Stanford_ChipSeq_ES-E14_Input_std
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
64478883
Reads aligned (%)
93.0
Duplicates removed (%)
30.7
Number of peaks
1177 (qval < 1E-05)

mm9

Number of total reads
64478883
Reads aligned (%)
92.7
Duplicates removed (%)
30.6
Number of peaks
1284 (qval < 1E-05)

Base call quality data from DBCLS SRA