SRX186779
GSM1003583: Broad ChipSeq K562 p300

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription
EP300(c-20)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-585
controlid
wgEncodeEH000052
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
F
antibody
p300
antibody antibodydescription
Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription
EP300(c-20)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-585
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
K562/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003583: Broad_ChipSeq_K562_p300
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
125754874
Reads aligned (%)
92.6
Duplicates removed (%)
15.1
Number of peaks
4422 (qval < 1E-05)

hg38

Number of total reads
125754874
Reads aligned (%)
93.5
Duplicates removed (%)
13.2
Number of peaks
4846 (qval < 1E-05)

Base call quality data from DBCLS SRA