Antigen

Antigen Class

TFs and others

Antigen

CTCF

Cell type

Cell type Class

Lung

Cell type

A549

Primary Tissue

Lung

Tissue Diagnosis

Carcinoma

Sample

source_name

A549

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

Rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

controlid

wgEncodeEH003076

replicate

1,2

softwareversion

ScriptureVPaperR3

cell sex

M

antibody

CTCF

antibody antibodydescription

rabbit polyclonal. Antibody Target: CTCF

antibody targetdescription

CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.

antibody vendorname

Millipore

antibody vendorid

07-729

treatment

EtOH_0.02pct

treatment description

1 h with 0.02% Ethanol (Myers)

control

std

control description

Standard input signal for most experiments.

controlid

A549/EtOH_0.02pct/Input/std

labversion

Illumina_HiSeq_2000

labversion description

Illumina HiSeq 2000

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM1003581: Broad_ChipSeq_A549_CTCF_EtOH_0.02pct

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

49234760

Reads aligned (%)

91.0

Duplicates removed (%)

18.2

Number of peaks

55926 (qval < 1E-05)

hg19

Number of total reads

49234760

Reads aligned (%)

90.4

Duplicates removed (%)

19.4

Number of peaks

55575 (qval < 1E-05)