Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CREBBP

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal, epitope mapping at the N-terminus of CBP of human origin. Antibody Target: CREBBP
antibody targetdescription
CBP is a histone acetyl transferase that promotes transcription. CBP is recruited by a variety of transcription factors to promoters and enhancers.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-369
controlid
wgEncodeEH000052
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
F
antibody
CBP_(sc-369)
antibody antibodydescription
Rabbit polyclonal, epitope mapping at the N-terminus of CBP of human origin. Antibody Target: CBP
antibody targetdescription
CBP is a histone acetyl transferase that promotes transcription. CBP is recruited by a variety of transcription factors to promoters and enhancers.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc369
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
K562/None/Input/std
labversion
Illumina_GA2x
labversion description
Illumina Genome Analyzer IIx
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003574: Broad_ChipSeq_K562_CBP_(sc-369)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
40074919
Reads aligned (%)
51.6
Duplicates removed (%)
18.3
Number of peaks
3037 (qval < 1E-05)

hg38

Number of total reads
40074919
Reads aligned (%)
52.8
Duplicates removed (%)
17.3
Number of peaks
2698 (qval < 1E-05)

Base call quality data from DBCLS SRA