Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SAP30

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
This SAP30 antibody (pAb) was raised against recombinant full length human SAP30 protein. Antibody Target: SAP30
antibody targetdescription
SAP30, also known asSin3A-associated protein, 30kDa, is part of the SIN3 corepressor complex, that also includes SIN3, SAP18,HDAC1,HDAC2,RbAp46andRbAp48. SAP30 is involved in the functional recruitment of the Sin3-histone deacetylase complex to a specific subset of N-CoR corepressor complexes.
antibody vendorname
Active Motif
antibody vendorid
39731
controlid
wgEncodeEH000088
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
SAP30_(39731)
antibody antibodydescription
This SAP30 antibody (pAb) was raised against recombinant full length human SAP30 protein. Antibody Target: SAP30
antibody targetdescription
SAP30, also known asSin3A-associated protein, 30kDa, is part of the SIN3 corepressor complex, that also includes SIN3, SAP18,HDAC1,HDAC2,RbAp46andRbAp48. SAP30 is involved in the functional recruitment of the Sin3-histone deacetylase complex to a specific subset of N-CoR corepressor complexes.
antibody vendorname
Active Motif
antibody vendorid
39731
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/None/Input/std
labversion
Illumina_GA2x
labversion description
Illumina Genome Analyzer IIx
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003572: Broad_ChipSeq_H1-hESC_SAP30_(39731)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
35436502
Reads aligned (%)
26.0
Duplicates removed (%)
32.8
Number of peaks
6876 (qval < 1E-05)

hg38

Number of total reads
35436502
Reads aligned (%)
26.6
Duplicates removed (%)
31.9
Number of peaks
6932 (qval < 1E-05)

Base call quality data from DBCLS SRA