Antigen

Antigen Class

TFs and others

Antigen

KDM1A

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

source_name

K562

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid

antibody targetdescription

BHC110/LSD1 is a histone demethylase and a component of several histone deacetylase complexes. BHC110/LSD1 is able to specifically catalyze the demethylation of Lys4 of histone H3. As part of histone deacetylase complexes BHC110/LSD1 functions as a corepressor of transcription.

antibody vendorname

Bethyl Laboratories

antibody vendorid

A300-215A

controlid

wgEncodeEH000052

replicate

1

softwareversion

ScriptureVPaperR3

cell sex

F

antibody

LSD1

antibody antibodydescription

Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid

antibody targetdescription

BHC110/LSD1 is a histone demethylase and a component of several histone deacetylase complexes. BHC110/LSD1 is able to specifically catalyze the demethylation of Lys4 of histone H3. As part of histone deacetylase complexes BHC110/LSD1 functions as a corepressor of transcription.

antibody vendorname

Bethyl

antibody vendorid

A300-215A

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

K562/None/Input/std

labversion

Illumina_HiSeq_2000

labversion description

Illumina HiSeq 2000

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM1003570: Broad_ChipSeq_K562_LSD1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

38937836

Reads aligned (%)

90.5

Duplicates removed (%)

48.1

Number of peaks

8706 (qval < 1E-05)

hg19

Number of total reads

38937836

Reads aligned (%)

89.8

Duplicates removed (%)

49.6

Number of peaks

8658 (qval < 1E-05)