Antigen

Antigen Class

TFs and others

Antigen

NCOR1

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

source_name

K562

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid Antibody Target: NCOR1

antibody targetdescription

The nuclear receptor corepressor protein (NCoR) mediates gene repression by interacting with nuclear receptors. NCoR mediates repression by associating with SIN3A/B and the histone deacetylases, HDAC1 and HDAC2, and promoting the formation of repressive chromatin structures.

antibody vendorname

Bethyl Laboratories

antibody vendorid

A301-145A

controlid

wgEncodeEH000052

replicate

1

softwareversion

ScriptureVPaperR3

cell sex

F

antibody

NCoR

antibody antibodydescription

Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid

antibody targetdescription

The nuclear receptor corepressor protein (NCoR) mediates gene repression by interacting with nuclear receptors. NCoR mediates repression by associating with SIN3A/B and the histone deacetylases, HDAC1 and HDAC2, and promoting the formation of repressive chromatin structures.

antibody vendorname

Bethyl

antibody vendorid

A301-145A

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

K562/None/Input/std

labversion

Illumina_HiSeq_2000

labversion description

Illumina HiSeq 2000

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM1003565: Broad_ChipSeq_K562_NCoR

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

37792608

Reads aligned (%)

29.0

Duplicates removed (%)

68.3

Number of peaks

1142 (qval < 1E-05)

hg38

Number of total reads

37792608

Reads aligned (%)

31.0

Duplicates removed (%)

66.4

Number of peaks

1029 (qval < 1E-05)