ChIP-Atlas: SRX186754

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Blood
Cell type: DND-41
Primary Tissue: Blood
Tissue Diagnosis: Leukemia

Attributes by original data submitter

Sample

source_name: Dnd41
biomaterial_provider: DSMZ
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
controlid: wgEncodeEH002434
replicate: 1,2
cell: Dnd41
cell organism: human
cell description: T cell leukemia with Notch mutation
cell karyotype: cancer
cell lineage: mesoderm
cell sex: M
antibody: Input
antibody description: Control signal which may be subtracted from experimental raw signal before peaks are called.
treatment: None
treatment description: No special treatment or protocol applies
control: std
control description: Standard input signal for most experiments.
controlid: Dnd41/Input/std
labversion: Illumina Genome Analyzer IIx
replicate: 1

Sequenced DNA Library

library_name: GSM1003558: Broad_ChipSeq_Dnd41_Input
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 81449479
Reads aligned (%): 97.6
Duplicates removed (%): 19.0
Number of peaks: 1873 (qval < 1E-05)

hg19

Number of total reads: 81449479
Reads aligned (%): 96.7
Duplicates removed (%): 21.1
Number of peaks: 1723 (qval < 1E-05)

Base call quality data from DBCLS SRA