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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K79me2
wikigenes
PDBj
CellType: HMEC
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX186753
GSM1003557: Broad ChipSeq HMEC H3K79me2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K79me2
Cell type
Cell type Class
Breast
Cell type
HMEC
Primary Tissue
Breast
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
HMEC
biomaterial_provider
Lonza
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2
antibody targetdescription
H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).
antibody vendorname
Active Motif
antibody vendorid
39143
controlid
wgEncodeEH000093
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
U
antibody
H3K79me2
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2
antibody targetdescription
H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).
antibody vendorname
Active Motif
antibody vendorid
39143
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
HMEC/Input/std
softwareversion
ScriptureVPaperR3
Sequenced DNA Library
library_name
GSM1003557: Broad_ChipSeq_HMEC_H3K79me2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
68425345
Reads aligned (%)
84.5
Duplicates removed (%)
7.2
Number of peaks
19508 (qval < 1E-05)
hg19
Number of total reads
68425345
Reads aligned (%)
84.4
Duplicates removed (%)
7.4
Number of peaks
19563 (qval < 1E-05)
Base call quality data from
DBCLS SRA