Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Blood

Cell type

DND-41

Primary Tissue

Blood

Tissue Diagnosis

Leukemia

Sample

source_name

Dnd41

biomaterial_provider

DSMZ

biomaterial_type

immortalized cell line

line

DND-41

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

antibody targetdescription

Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

antibody vendorname

abcam

antibody vendorid

ab8898

controlid

wgEncodeEH002434

replicate

1,2

softwareversion

ScriptureVPaperR3

cell sex

M

antibody

H3K9me3

antibody antibodydescription

rabbit polyclonal, ChIP grade. Antibody Target: H3K9me3

antibody targetdescription

Histone H3 (tri methyl K9). Is associated with repressive heterochromatic state (silenced chromatin). NOTE CONTRAST to H3K9me1 which is associated with active and accessible regions.

antibody vendorname

Abcam

antibody vendorid

ab8898

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

Dnd41/Input/std

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM1003551: Broad_ChipSeq_Dnd41_H3K9me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

70402980

Reads aligned (%)

92.0

Duplicates removed (%)

28.2

Number of peaks

3241 (qval < 1E-05)

hg19

Number of total reads

70402980

Reads aligned (%)

89.8

Duplicates removed (%)

32.1

Number of peaks

2234 (qval < 1E-05)