Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Lung

Cell type

A549

Primary Tissue

Lung

Tissue Diagnosis

Carcinoma

Sample

source_name

A549

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

controlid

wgEncodeEH003075

replicate

1,2

cell

A549

cell organism

human

cell description

epithelial cell line derived from a lung carcinoma tissue. (PMID: 175022), "This line was initiated in 1972 by D.J. Giard, et al. through explant culture of lung carcinomatous tissue from a 58-year-old caucasian male." - ATCC, newly promoted to tier 2: not in 2011 analysis

cell karyotype

cancer

cell lineage

endoderm

cell sex

M

antibody

Control

treatment

DEX_100nM

treatment description

1 h with 100 nM Dexamethasone (Myers)

control

std

control description

Standard input signal for most experiments.

controlid

A549/DEX_100nM/Input/std

labversion

Illumina_HiSeq_2000

labversion description

Illumina HiSeq 2000

replicate

1

Sequenced DNA Library

library_name

GSM1003540: Broad_ChipSeq_A549_Control_DEX_100nM

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

61354893

Reads aligned (%)

96.8

Duplicates removed (%)

5.4

Number of peaks

1625 (qval < 1E-05)

hg19

Number of total reads

61354893

Reads aligned (%)

96.0

Duplicates removed (%)

7.3

Number of peaks

1504 (qval < 1E-05)