Antigen

Antigen Class

Histone

Antigen

H3K4me3

Cell type

Cell type Class

Blood

Cell type

Monocytes-CD14+

Tissue

monocytes

Lineage

mesoderm

Description

Monocytes-CD14+ are CD14-positive cells from human leukapheresis production, from donor RO 01746 (draw 1 ID is RO 01746, draw 2 ID is RO 01826), newly promoted to tier 2: not in 2011 analysis

Sample

source_name

Monocytes-CD14+_RO01746

biomaterial_provider

S. Heimfeld Laboratory, FHCRC

donor_id

ENCDO265AAA

biomaterial_type

primary cell

cell_type

CD14-positive monocyte

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

rabbit polyclonal. Antibody Target: H3K4me3

antibody targetdescription

Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

antibody vendorname

1)abcam; 2)Millipore

antibody vendorid

ab8580; 07-473

controlid

wgEncodeEH003130

replicate

1,2

softwareversion

ScriptureVPaperR3

cell sex

F

antibody

H3K4me3

antibody antibodydescription

rabbit polyclonal. Antibody Target: H3K4me3

antibody targetdescription

Histone H3 (tri methyl K4). Marks promoters that are active or poised to be activated.

antibody vendorname

Millipore

antibody vendorid

07-473

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

Monocytes-CD14+_RO01746/Input/std

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM1003536: Broad_ChipSeq_Monocytes-CD14+_RO01746_H3K4me3

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

44817144

Reads aligned (%)

96.3

Duplicates removed (%)

25.9

Number of peaks

42119 (qval < 1E-05)

hg19

Number of total reads

44817144

Reads aligned (%)

94.8

Duplicates removed (%)

28.9

Number of peaks

41706 (qval < 1E-05)