Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid
antibody targetdescription
Histone acetyltransferase with sequence similarity to CBP (CREB-binding protein). Regulates transcription by influencing chromatin organization. P300 has been demonstrated to bind to phosphorylated CREB to mediate cAMP-gene regulation.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A300-358A
controlid
wgEncodeEH000088
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
P300_KAT3B
antibody antibodydescription
Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid
antibody targetdescription
Histone acetyltransferase with sequence similarity to CBP (CREB-binding protein). Regulates transcription by influencing chromatin organization. P300 has been demonstrated to bind to phosphorylated CREB to mediate cAMP-gene regulation.
antibody vendorname
Bethyl
antibody vendorid
A300-358A
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/None/Input/std
labversion
Illumina_GA2x
labversion description
Illumina Genome Analyzer IIx
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003513: Broad_ChipSeq_H1-hESC_P300_KAT3B
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
28704285
Reads aligned (%)
66.4
Duplicates removed (%)
20.3
Number of peaks
2985 (qval < 1E-05)

hg38

Number of total reads
28704285
Reads aligned (%)
67.9
Duplicates removed (%)
19.2
Number of peaks
2949 (qval < 1E-05)

Base call quality data from DBCLS SRA