Antigen

Antigen Class

TFs and others

Antigen

CHD4

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

source_name

K562

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid Antibody Target: CHD4

antibody targetdescription

CHD4/Mi2beta is a helicase component of the nucleosome remodeling and deacetylase (NuRD) complex that functions to remodel chromatin and repress transcription. Outside of the NuRD complex, CHD4/Mi2beta can function as an activator of transcription in association with p300 histone acetyltransferase.

antibody vendorname

Bethyl Laboratories

antibody vendorid

A301-081A

controlid

wgEncodeEH000052

replicate

1

softwareversion

ScriptureVPaperR3

cell sex

F

antibody

CHD4_Mi2

antibody antibodydescription

Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid

antibody targetdescription

CHD4/Mi2beta is a helicase component of the nucleosome remodeling and deacetylase (NuRD) complex that functions to remodel chromatin and repress transcription. Outside of the NuRD complex, CHD4/Mi2beta can function as an activator of transcription in association with p300 histone acetyltransferase.

antibody vendorname

Bethyl

antibody vendorid

A301-081A

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

K562/None/Input/std

labversion

Illumina_HiSeq_2000

labversion description

Illumina HiSeq 2000

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM1003510: Broad_ChipSeq_K562_CHD4_Mi2

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

38449985

Reads aligned (%)

69.1

Duplicates removed (%)

65.1

Number of peaks

284 (qval < 1E-05)

hg19

Number of total reads

38449985

Reads aligned (%)

68.6

Duplicates removed (%)

66.8

Number of peaks

767 (qval < 1E-05)