Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CHD4

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid Antibody Target: CHD4
antibody targetdescription
CHD4/Mi2beta is a helicase component of the nucleosome remodeling and deacetylase (NuRD) complex that functions to remodel chromatin and repress transcription. Outside of the NuRD complex, CHD4/Mi2beta can function as an activator of transcription in association with p300 histone acetyltransferase.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A301-081A
controlid
wgEncodeEH000052
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
F
antibody
CHD4_Mi2
antibody antibodydescription
Rabbit Polyclonal Antigen Affinity Purified, Unconjugated, Liquid
antibody targetdescription
CHD4/Mi2beta is a helicase component of the nucleosome remodeling and deacetylase (NuRD) complex that functions to remodel chromatin and repress transcription. Outside of the NuRD complex, CHD4/Mi2beta can function as an activator of transcription in association with p300 histone acetyltransferase.
antibody vendorname
Bethyl
antibody vendorid
A301-081A
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
K562/None/Input/std
labversion
Illumina_HiSeq_2000
labversion description
Illumina HiSeq 2000
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003510: Broad_ChipSeq_K562_CHD4_Mi2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
38449985
Reads aligned (%)
22.7
Duplicates removed (%)
66.8
Number of peaks
767 (qval < 1E-05)

hg38

Number of total reads
38449985
Reads aligned (%)
24.1
Duplicates removed (%)
65.1
Number of peaks
284 (qval < 1E-05)

Base call quality data from DBCLS SRA