Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
PHF8

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PHF8
antibody targetdescription
PHF8 (PHD finger protein 8) is a member of the jumonji family of proteins and contains a jumonji C (JmjC) domain. The JmjC proteins are predicted to be metalloenzymes that play a role a chromatin remodeling and histone demethylation. PHF8 also bears a PHD (plant homeodomain)- type zinc-finger, a domain also found to be involved in chromatin remodeling and transcriptional regulation. Truncating mutations in PHF8 are associated with X-linked mental retardation and cleft lip/cleft palate. PHF8 is also known as ZNF422 and KIAA1111.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A301-772A
controlid
wgEncodeEH000088
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
PHF8_(A301-772A)
antibody antibodydescription
Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: PHF8
antibody targetdescription
PHF8 (PHD finger protein 8) is a member of the jumonji family of proteins and contains a jumonji C (JmjC) domain. The JmjC proteins are predicted to be metalloenzymes that play a role a chromatin remodeling and histone demethylation. PHF8 also bears a PHD (plant homeodomain)- type zinc-finger, a domain also found to be involved in chromatin remodeling and transcriptional regulation. Truncating mutations in PHF8 are associated with X-linked mental retardation and cleft lip/cleft palate. PHF8 is also known as ZNF422 and KIAA1111.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A301-772A
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/None/Input/std
labversion
Illumina_GA2x
labversion description
Illumina Genome Analyzer IIx
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003509: Broad_ChipSeq_H1-hESC_PHF8_(A301-772A)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
30997765
Reads aligned (%)
58.7
Duplicates removed (%)
25.5
Number of peaks
15739 (qval < 1E-05)

hg38

Number of total reads
30997765
Reads aligned (%)
59.9
Duplicates removed (%)
24.4
Number of peaks
15729 (qval < 1E-05)

Base call quality data from DBCLS SRA