SRX186698
GSM1003502: Broad ChipSeq Osteobl H3K79me2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K79me2

Cell type

Cell type Class
Bone
Cell type
Osteobl
Tissue
bone
Lineage
mesoderm
Description
osteoblasts (NHOst)

Attributes by original data submitter

Sample

source_name
Osteobl
biomaterial_provider
Lonza
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2
antibody targetdescription
H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).
antibody vendorname
Active Motif
antibody vendorid
39143
controlid
wgEncodeEH001056
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
U
antibody
H3K79me2
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide containing K79 di-methylation. Antibody Target: H3K79me2
antibody targetdescription
H3K79me2 is a mark of the transcriptional transition region - the region between the initiation marks (K4me3, etc) and the elongation marks (K36me3).
antibody vendorname
Active Motif
antibody vendorid
39143
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
Osteobl/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
116324073
Reads aligned (%)
96.3
Duplicates removed (%)
10.5
Number of peaks
20396 (qval < 1E-05)

hg19

Number of total reads
116324073
Reads aligned (%)
96.0
Duplicates removed (%)
10.9
Number of peaks
20476 (qval < 1E-05)

Base call quality data from DBCLS SRA