Antigen

Antigen Class

TFs and others

Antigen

KDM4A

Cell type

Cell type Class

Pluripotent stem cell

Cell type

hESC H1

NA

NA

Sample

source_name

H1-hESC

biomaterial_provider

WiCell Research Institute

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

rabbit polyclonal antigen affinity purified, unconjugated, liquid

antibody targetdescription

JMJD2A is a member of the jumonji (jmj) domain containing gene family of histone demethylases that plays a role in chromatin regulation and influences transcriptional activation and suppression. JMJD2A is a trimethylation-specific demethylase and functions as a transcriptional repressor.

antibody vendorname

Bethyl Laboratories

antibody vendorid

A300-861A

controlid

wgEncodeEH000088

replicate

1

softwareversion

ScriptureVPaperR3

cell sex

M

antibody

JMJD2A_(A300-861A-1)

antibody antibodydescription

rabbit polyclonal antigen affinity purified, unconjugated, liquid

antibody targetdescription

JMJD2A is a member of the jumonji (jmj) domain containing gene family of histone demethylases that plays a role in chromatin regulation and influences transcriptional activation and suppression. JMJD2A is a trimethylation-specific demethylase and functions as a transcriptional repressor.

antibody vendorname

Bethyl

antibody vendorid

A300-861A

treatment

None

treatment description

No special treatment or protocol applies

control

std

control description

Standard input signal for most experiments.

controlid

H1-hESC/None/Input/std

labversion

Illumina_GA2x

labversion description

Illumina Genome Analyzer IIx

softwareversion

ScriptureVPaperR3

Sequenced DNA Library

library_name

GSM1003479: Broad_ChipSeq_H1-hESC_JMJD2A_(A300-861A-1)

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

43258375

Reads aligned (%)

85.3

Duplicates removed (%)

43.1

Number of peaks

25564 (qval < 1E-05)

hg19

Number of total reads

43258375

Reads aligned (%)

84.7

Duplicates removed (%)

44.3

Number of peaks

25438 (qval < 1E-05)