Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM4A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
rabbit polyclonal antigen affinity purified, unconjugated, liquid
antibody targetdescription
JMJD2A is a member of the jumonji (jmj) domain containing gene family of histone demethylases that plays a role in chromatin regulation and influences transcriptional activation and suppression. JMJD2A is a trimethylation-specific demethylase and functions as a transcriptional repressor.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A300-861A
controlid
wgEncodeEH000088
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
JMJD2A_(A300-861A-1)
antibody antibodydescription
rabbit polyclonal antigen affinity purified, unconjugated, liquid
antibody targetdescription
JMJD2A is a member of the jumonji (jmj) domain containing gene family of histone demethylases that plays a role in chromatin regulation and influences transcriptional activation and suppression. JMJD2A is a trimethylation-specific demethylase and functions as a transcriptional repressor.
antibody vendorname
Bethyl
antibody vendorid
A300-861A
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/None/Input/std
labversion
Illumina_GA2x
labversion description
Illumina Genome Analyzer IIx
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003479: Broad_ChipSeq_H1-hESC_JMJD2A_(A300-861A-1)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
43258375
Reads aligned (%)
47.2
Duplicates removed (%)
44.3
Number of peaks
25438 (qval < 1E-05)

hg38

Number of total reads
43258375
Reads aligned (%)
48.6
Duplicates removed (%)
43.1
Number of peaks
25564 (qval < 1E-05)

Base call quality data from DBCLS SRA