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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: Input control
wikigenes
PDBj
CellType: CD20+ B cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX186673
GSM1003477: Broad ChipSeq CD20+ Control
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Input control
Antigen
Input control
Cell type
Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA
Attributes by original data submitter
Sample
source_name
CD20+
biomaterial_provider
Dr. Heimfeld Lab at FHCRC
donor_id
ENCDO115AAA,ENCDO114AAA
biomaterial_type
primary cell
cell_type
B cell
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
controlid
wgEncodeEH003132
replicate
1,2
cell
CD20+
cell organism
human
cell description
B cells from donors RO01778 and RO01794, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
Control
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
CD20+/None/Input/std
labversion
Illumina_HiSeq_2000
labversion description
Illumina HiSeq 2000
replicate
1
Sequenced DNA Library
library_name
GSM1003477: Broad_ChipSeq_CD20+_Control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
148175247
Reads aligned (%)
92.0
Duplicates removed (%)
23.5
Number of peaks
2630 (qval < 1E-05)
hg19
Number of total reads
148175247
Reads aligned (%)
91.1
Duplicates removed (%)
25.5
Number of peaks
1889 (qval < 1E-05)
Base call quality data from
DBCLS SRA