Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD20+ B cells
NA
NA

Attributes by original data submitter

Sample

source_name
CD20+
biomaterial_provider
Dr. Heimfeld Lab at FHCRC
donor_id
ENCDO115AAA,ENCDO114AAA
biomaterial_type
primary cell
cell_type
B cell
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
controlid
wgEncodeEH003132
replicate
1,2
cell
CD20+
cell organism
human
cell description
B cells from donors RO01778 and RO01794, newly promoted to tier 2: not in 2011 analysis
cell karyotype
normal
cell lineage
mesoderm
cell sex
F
antibody
Control
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
CD20+/None/Input/std
labversion
Illumina_HiSeq_2000
labversion description
Illumina HiSeq 2000
replicate
1

Sequenced DNA Library

library_name
GSM1003477: Broad_ChipSeq_CD20+_Control
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
148175247
Reads aligned (%)
92.0
Duplicates removed (%)
23.5
Number of peaks
2630 (qval < 1E-05)

hg19

Number of total reads
148175247
Reads aligned (%)
91.1
Duplicates removed (%)
25.5
Number of peaks
1889 (qval < 1E-05)

Base call quality data from DBCLS SRA