SRX186661
GSM1003465: Broad ChipSeq Dnd41 H2A.Z

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H2A.Z

Cell type

Cell type Class
Blood
Cell type
DND-41
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Dnd41
biomaterial_provider
DSMZ
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ
antibody targetdescription
H2A.Z is a sequence variant of Histone H2A.
antibody vendorname
Millipore
antibody vendorid
07-594
controlid
wgEncodeEH002434
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
H2A.Z
antibody antibodydescription
Rabbit polyclonal antibody raised against a peptide corresponding to the C-terminus of H2AZ. Antibody Target: H2AZ
antibody targetdescription
H2A.Z is a sequence variant of Histone H2A.
antibody vendorname
Upstate (Millipore)
antibody vendorid
07-594
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
Dnd41/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003465: Broad_ChipSeq_Dnd41_H2A.Z
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57841340
Reads aligned (%)
87.1
Duplicates removed (%)
8.0
Number of peaks
31018 (qval < 1E-05)

hg19

Number of total reads
57841340
Reads aligned (%)
86.4
Duplicates removed (%)
9.5
Number of peaks
31013 (qval < 1E-05)

Base call quality data from DBCLS SRA