Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K36me3

Cell type

Cell type Class
Blood
Cell type
DND-41
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Dnd41
biomaterial_provider
DSMZ
biomaterial_type
immortalized cell line
line
DND-41
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription
Specific for histone H3 tri methylated at lysine 36, weakly reacts with H3K36me2. Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname
abcam
antibody vendorid
ab9050
controlid
wgEncodeEH002434
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
H3K36me3
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K36me3
antibody targetdescription
Histone H3 (tri-methyl K36). Marks regions of RNAPII elongation, including coding and non-coding transcripts.
antibody vendorname
Abcam
antibody vendorid
ab9050
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
Dnd41/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003463: Broad_ChipSeq_Dnd41_H3K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
62180597
Reads aligned (%)
97.8
Duplicates removed (%)
7.0
Number of peaks
6098 (qval < 1E-05)

hg19

Number of total reads
62180597
Reads aligned (%)
97.2
Duplicates removed (%)
8.0
Number of peaks
5904 (qval < 1E-05)

Base call quality data from DBCLS SRA