SRX186656
GSM1003460: Broad ChipSeq Dnd41 H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Blood
Cell type
DND-41
Primary Tissue
Blood
Tissue Diagnosis
Leukemia

Attributes by original data submitter

Sample

source_name
Dnd41
biomaterial_provider
DSMZ
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
abcam
antibody vendorid
ab8895
controlid
wgEncodeEH002434
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
H3K4me1
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
Abcam
antibody vendorid
ab8895
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
Dnd41/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003460: Broad_ChipSeq_Dnd41_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
67837843
Reads aligned (%)
77.8
Duplicates removed (%)
10.8
Number of peaks
60648 (qval < 1E-05)

hg19

Number of total reads
67837843
Reads aligned (%)
77.5
Duplicates removed (%)
11.5
Number of peaks
60353 (qval < 1E-05)

Base call quality data from DBCLS SRA