SRX186647
GSM1003451: Broad ChipSeq H1-hESC SIRT6

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
SIRT6

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal. Antibody Target: SIRT6
antibody targetdescription
A synthetic peptide made to an internal region of the human SIRT6 protein
antibody vendorname
abcam
antibody vendorid
ab48192
controlid
wgEncodeEH000088
replicate
1
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
SIRT6
antibody antibodydescription
Rabbit polyclonal. Antibody Target: SIRT6
antibody targetdescription
A synthetic peptide made to an internal region of the human SIRT6 protein
antibody vendorname
Abcam
antibody vendorid
ab48192
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/None/Input/std
labversion
Illumina_GA2x
labversion description
Illumina Genome Analyzer IIx
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003451: Broad_ChipSeq_H1-hESC_SIRT6
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
43772610
Reads aligned (%)
81.1
Duplicates removed (%)
7.8
Number of peaks
1056 (qval < 1E-05)

hg19

Number of total reads
43772610
Reads aligned (%)
80.4
Duplicates removed (%)
9.0
Number of peaks
1187 (qval < 1E-05)

Base call quality data from DBCLS SRA