Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC2

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: HDAC2
antibody targetdescription
Histone deacetylase 2 (HDAC2) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC2 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC2 include HD2, RPD3, and YAF1.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A300-705A
controlid
wgEncodeEH000052
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
F
antibody
HDAC2_(A300-705A)
antibody antibodydescription
Polyclonal Antigen Affinity Purified, Unconjugated, Liquid. Antibody Target: HDAC2
antibody targetdescription
Histone deacetylase 2 (HDAC2) is a class I histone deacetylase that catalyzes the removal of the acetyl group on lysine residues of the N-terminus of the core histones H2A, H2B, H3, and H4. HDAC2 is a component of multiple deacetylating complexes such as Sin3, NuRD, and CoRest that function to repress gene transcription. Alternate names for HDAC2 include HD2, RPD3, and YAF1.
antibody vendorname
Bethyl Laboratories
antibody vendorid
A300-705A
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
K562/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003447: Broad_ChipSeq_K562_HDAC2_(A300-705A)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
70039752
Reads aligned (%)
49.4
Duplicates removed (%)
33.2
Number of peaks
2845 (qval < 1E-05)

hg38

Number of total reads
70039752
Reads aligned (%)
50.8
Duplicates removed (%)
31.8
Number of peaks
3074 (qval < 1E-05)

Base call quality data from DBCLS SRA