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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: KDM5A
wikigenes
PDBj
CellType: hESC H1
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX186642
GSM1003446: Broad ChipSeq H1-hESC JARID1A (ab26049)
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
KDM5A
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA
Attributes by original data submitter
Sample
source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal to KDM5A / Jarid1A / RBBP2. Antibody Target: JARID1A
antibody targetdescription
Histone demethylase that specifically demethylates
antibody vendorname
abcam
antibody vendorid
ab26049
controlid
wgEncodeEH000088
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
JARID1A_(ab26049)
antibody antibodydescription
Rabbit polyclonal to KDM5A / Jarid1A / RBBP2. Antibody Target: JARID1A
antibody targetdescription
Histone demethylase that specifically demethylates
antibody vendorname
Abcam
antibody vendorid
ab26049
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/Input/std
softwareversion
ScriptureVPaperR3
Sequenced DNA Library
library_name
GSM1003446: Broad_ChipSeq_H1-hESC_JARID1A_(ab26049)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
74717049
Reads aligned (%)
85.1
Duplicates removed (%)
35.9
Number of peaks
2748 (qval < 1E-05)
hg19
Number of total reads
74717049
Reads aligned (%)
84.4
Duplicates removed (%)
37.5
Number of peaks
2629 (qval < 1E-05)
Base call quality data from
DBCLS SRA