Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
KDM5A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal to KDM5A / Jarid1A / RBBP2. Antibody Target: JARID1A
antibody targetdescription
Histone demethylase that specifically demethylates
antibody vendorname
abcam
antibody vendorid
ab26049
controlid
wgEncodeEH000088
replicate
1,2
softwareversion
ScriptureVPaperR3
cell sex
M
antibody
JARID1A_(ab26049)
antibody antibodydescription
Rabbit polyclonal to KDM5A / Jarid1A / RBBP2. Antibody Target: JARID1A
antibody targetdescription
Histone demethylase that specifically demethylates
antibody vendorname
Abcam
antibody vendorid
ab26049
treatment
None
treatment description
No special treatment or protocol applies
control
std
control description
Standard input signal for most experiments.
controlid
H1-hESC/Input/std
softwareversion
ScriptureVPaperR3

Sequenced DNA Library

library_name
GSM1003446: Broad_ChipSeq_H1-hESC_JARID1A_(ab26049)
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
74717049
Reads aligned (%)
52.7
Duplicates removed (%)
37.5
Number of peaks
2629 (qval < 1E-05)

hg38

Number of total reads
74717049
Reads aligned (%)
54.5
Duplicates removed (%)
35.9
Number of peaks
2748 (qval < 1E-05)

Base call quality data from DBCLS SRA